PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30205.m001591
Common NameLOC8261189, RCOM_1726570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 219aa    MW: 24486.1 Da    PI: 6.8475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30205.m001591genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00036486123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C++C + F ++  L  H++ H
  30205.m001591 64 YECQYCFREFANSQALGGHQNAH 86
                   99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-66191No hitNo description
Gene3DG3DSA:3.30.160.606.6E-46190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5726491IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MADIDYHTTK PNARITDNNN TTLKLFGFNI NSYNVTAPDD STKSPSGSSP ESADETTDHQ  60
GRKYECQYCF REFANSQALG GHQNAHKKER QLLKRAQLQA TRNLAASYVP ASMFSTFTPL  120
PPHLLPRGVV PFAVQQQHHH QQSSSPWFYT PHFNRLSQGS PLLSGPERRL EDELIMTPDE  180
DLGLHERTLQ PAAAWRGFGG EDGESHHDKG LGLNLHLSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516736.11e-164PREDICTED: zinc finger protein 6
TrEMBLB9RSL71e-164B9RSL7_RICCO; Zinc finger protein, putative
STRINGPOPTR_0005s15460.14e-58(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31981316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.12e-13C2H2 family protein